The Institute for Globally Distributed Open Research and Education: IGDORE

Biosystems Analytics

Over on the Ronin Institute blog, I recently conducted an interview with  Rebecca Willén of the Institute for Globally Distributed Open Research and Education (IGDORE) one the Ronin Institute’s  Fellow Travelers: organizations share some common goals, approaches or philosophy with the Ronin Institute.

Rebecca Willén

In this interview, I asked Rebeccca about the motivations for founding IGDORE, discuss what “New Academia” is all about and our changing academic cultures . [This is a edited version of our conversation. Full disclosure: I am an affiliated researcher with IGDORE].

Tell me a bit about IGDORE?

IGDORE stands for the Institute for Globally Distributed Open Research and Education. It’s an independent institute I founded in 2016, directly after I had finished my PhD.  It’s a virtual research institute, just like Ronin. We have one non-virtual facility and that is on Bali in Indonesia.

What motivated you to…

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Revisiting the gig economy: a Labor Day post

Biosystems Analytics

Reposted from my Ronin Institute blog post

The Ronin Institute’s Research Scholars are drawn from many different career stages, levels of experience and backgrounds, and given that we don’t advocate a single model of a career in scholarship (in contrast to the traditional academic pipeline), it isn’t surprising that Research Scholars explore many different means to support their scholarship (we are still analyzing the results of the independent scholarship survey we did last year, but this much is clear). For many Research Scholars who are also freelancers, especially those in the sciences, one common means of support is being hired for short or long-term projects by academic institutions, private companies or non-profit organizations. This may be in in full-time or part-time capacity as an independent contractor or consultant. Ideally these projects utilise the scholars’ unique research background and skills and the experience and skills gained during consulting activities will…

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Scientific “ecosystem” paper now published in F1000 Research

Biosystems Analytics

I’ve previously blogged about our PeerJ Pre-print on moving away from the dominant metaphor of the scientific enterprise as “pipeline” leading to professorial positions in universities, towards a metaphor of diverse “ecosystem”. The paper has now been published in F1000 Research and has already garnered one peer review:

Lancaster AK, Thessen AE and Virapongse A. A new paradigm for the scientific enterprise: nurturing the ecosystem [version 1; referees: 1 approved]. F1000Research 2018, 7:803
(doi: 10.12688/f1000research.15078.1)

One the major points of the paper is that we need to move away from the currently closed system that emphasizes artificial scarcity (e.g. in journal spots), towards a system that emphasizes abundance, and we feel that publishing in journals that use post–publication and transparent peer review (like F1000 Research) helps us “walk-the-walk” as we build those new ecosystems.

Table 1 from the paper reinforces this point: illustrating the contrasting language between…

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Let’s create new scientific ecosystems and leave the pipeline behind

Biosystems Analytics

The Cultivating Ensembles in STEM Education and Research (CESTEMER) was held at the Goodman Theater in downtown Chicago on September 15-17, 2017. Initiated by Raquell Holmes and improvscience in 2012, it brings together a diverse mixture of scientists, artists, humanists and performers to discuss and discover new ways of doing science in groups. I was fortunate to attend and gave short talk outlining how the Ronin Institute is aiming to foster new ways of thinking of the scientific enterprise as an “ecosystem” of peers. I have a post up on the Ronin Institute blog about my talk and my experience of the conference.  Here’s an excerpt:

In this ecosystem, scientists collectively empower themselves to build scientific careers in whatever mode or style works for them in the context of the rest of their lives (whether this is in a university setting or elsewhere). I contrasted this ecosystem idea…

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Listen to a podcast interview with Alex Lancaster discussing new book

Biosystems Analytics

Listen to, or read a transcript of, a podcast interviewwith Biosystems Analytics’ and Python for the Life Sciences co-author, Alex Lancaster. The interview was recorded for our digital publisher Leanpub’s author podcast series, by Leanpub co-founder Len Epp. In a wide-ranging discussing Len discussed Alex’s career, funding in science, evolutionary biology, the state of the book publishing industry and many other things. The podcast was recorded back in November 2016.

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Python for the Life Sciences now available in select book stores

Biosystems Analytics

I’m happy to announce that if you live in the Greater Boston area that our book, Python For The Life Sciences is now on a book shelf near you. You can pick up a copy at Harvard Book Store in Harvard Square, Cambridge, Porter Square Books in, you guessed it, Porter Square, Cambridge or The Book Rack in Arlington. We hope to continue to add more bookstores.

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Universities’s Most Excellent Adventures

Yours truly, reposted from the Ronin Institute blog

Academics in traditional university environments tend to be keenly aware of where their university ranks, whether they like to admit this or not. Most familiar are the college-level rankings like those from the US News & World Report, which weigh the undergraduate experience heavily. However in the research world, the notion of “excellence” has become the coin of the realm as evidenced by a proliferation of “excellence frameworks” such as the Research Excellence Framework  (UK), the German Universities Excellence Initiative, the Excellence in Research for Australia and the Performance Based Research Fund (New Zealand).  Given that many resources from capital funds, grants and permanent positions are doled out in accordance with rankings, where one’s institution stands goes beyond mere bragging rights. Most academics understand the arbitrary nature of such rankings and despite regular kvetching that they are either “unfair” (usually from those at an institution “lower” in the rankings) or that they have “finally” recognized the true worth of their institution (usually from those rising in the rankings), the existence of the ranking system itself, is normally taken as given.  After all, how are we to sort the worthy from the unworthy?

Samuel Moore, Cameron Neylon, Martin Paul Eve, Daniel Paul O’Donnell and Damian Pattinson have published an (ahem), excellent research paper “Excellence R Us”: university research and the fetishisation of excellence that comprehensively examines both the notion and practices of “excellence” in research.  Excellence, as most of the research frameworks define it, essentially boils down to some combination of ranking institutions by their scholars ability to publish in established prestige journals, ability to gain external grants and other easily-measured metric of scholarly output.

Their conclusion, in a nutshell: “excellence” is totally bogus:

…a focus on “excellence” impedes rather than promotes scientific and scholarly activity: it at the same time discourages both the intellectual risk-taking required to make the most significant advances in paradigm-shifting research and the careful “Normal Science” (Kuhn [1962] 2012) that allows us to consolidate our knowledge in the wake of such advances. It encourages researchers to engage in counterproductive conscious and unconscious gamesmanship. And it impoverishes science and scholarship by encouraging concentration rather than distribution of effort.

In other words in the context of scientific scholarship: focusing on excellence prevents the two things that we say we want from from science: careful reproducible science and the big breakthroughs. The article covers familiar ground to those who have been following the state of academia including discussions of the lack of reproducibility in science, the pernicious use of journal prestige to evaluate academics, and the general environment of hypercompetition in research. Many, if not most, academics are aware these issues, having been covered extensively in the trade press in recent years, but continue to view them through the lens of their effect on traditional tenure-track (or equivalent) faculty with established research programs. So it is refreshing that the article tackles how the rhetoric of ”excellence” can restrict the range of types and styles of scholarship, issues that are close to the heart of the Ronin Institute:

There is, however, another effect of the drive for “excellence”: a restriction in the range of scholars, of the research and scholarship performed by such scholars, and the impact such research and scholarship has on the larger population. Although “excellence” is commonly presented as the most fair or efficient way to distribute scarce resources (Sewitz, 2014), it in fact can have an impoverishing effect on the very practices that it seeks to encourage. A funding programme that looks to improve a nation’s research capacity by differentially rewarding “excellence” can have the paradoxical effect of reducing this capacity by underfunding the very forms of “normal” work that make science function (Kuhn [1962] 2012) or distract attention from national priorities and well-conducted research towards a focus on performance measures of North America and Europe (Vessuri et al., 2014)

The article continues by pointing out that “excellence” is often used as a proxy for  academic work that fit certain “standard” modes, which can result in a more bland and conformist world of scholarship:

Given the strong evidence that there is systemic bias within the institutions of research against women, under-represented ethnic groups, non-traditional centres of scholarship, and other disadvantaged groups (for a forthright admission of this bias with regard to non-traditional centres of scholarship, see Goodrich, 1945), it follows that an emphasis on the performance of “excellence”—or, in other words, being able to convince colleagues that one is even more deserving of reward than others in the same field—will create even stronger pressure to conform to unexamined biases and norms within the disciplinary culture: challenging expectations as to what it means to be a scientist is a very difficult way of demonstrating that you are the “best” at science; it is much easier if your appearance, work patterns, and research goals conform to those of which your adjudicators have previous experience. In a culture of “excellence” the quality of work from those who do not work in the expected “normative” fashion run a serious risk of being under-estimated and unrecognised.

As the authors point out it is common in such pieces to identify:

institutional administrators captured by neo-liberal ideologies, funders over-focussed on delivering measurable returns rather than positive change, governments obsessed with economic growth at the cost of social or community value

as the primary cultural driver of metric-driven “excellence”. And this is definitely a huge part of the issue (see Ronin blog posts “Graeber on the Transformation of Universities” and “Henry Heller on IP-Based Capitalism at Universities”), but it’s not the only driver. Attributing these issues purely to external forces lets the academy somewhat off the hook since:

the roots of the problem in fact lie in the internal narratives of the academy and the nature of “excellence” and “quality” as supposedly shared concepts that researchers have developed into shields of their autonomy. The solution to such problems lies not in arguing for more resources for distribution via existing channels as this will simply lead to further concentration and hypercompetition. Instead, we have argued, these internal narratives of the academy must be reformulated.

In other words: academia probably needs to take a look in the mirror once in a while and should question whether current norms really still serve their twin stated goals of encouraging sound “normal” scholarship as well as risky breakthroughs. I would also add: enabling all scholars to participate in whatever way fits their individual talents. There is much more to the article than space allows here, it’s a good piece for anybody interested in the future of scholarship, and it includes a highly detailed bibliography.

Citation: Moore, Neylon, Eve, O’Donnell, Pattinson. Palgrave Communications 3, Article number: 16105 (2017)

Coda: In a nice example of walking the walk, the authors have this note about “subverting traditional scarce markers of prestige” by adopting:

a redistributive approach to the order of their names in the byline. As an international collaboration of uniformly nice people (cf. Moran et al., 2016; Hoover et al., 1987; see Tartamelia, 2014 for an explanation), lacking access to a croquet field (cf. Hassell and May, 1974), writing as individuals rather than an academic version of the Borg (see Guedj, 2009), and not identifying any excellent pun (cf. Alpher et al., 1948; Lord et al., 1986) or “disarmingly quaint nom de guerre” (cf. Mrs Kinpaisby, 2008, 298 [thanks to Oli Duke-Williams for this reference]) to be made from the ordering of our names, we elected to assign index numbers to our surnames and randomize these using an online tool.

Nature’s cultural blindspot

Yours truly on the Ronin Institute blog

A recent editorial in NatureYoung scientists thrive in life after academia” on the future of careers for today’s scientists is on one hand, both optimistic, but on the other, deeply unsatisfying. The editorial is clearly well-intentioned, providing what it sees as a hope for a generation of new scientists facing the worse funding climate and academic job market in decades. I agree with the editors that it is encouraging that people with PhDs and long periods of training are finding gainful employment.

However the editorial has what might be called a cultural blindspot: the default assumption that doing research science is largely an activity that one undertakes only within a specific set of jobs performed in specific institutions and once you’re out of those institutions, there’s both no way to continue, nor any way back.  Of those who moved out of academic positions:

Many had managed to stay in touch with science, and worked in a related function such as administration, outreach or publishing.

This seems to me to be disempowering: the best one can hope for is “to stay in touch with science”[1]. Is this really the most we can do for those who have spent many years acquiring skill and knowledge of a subject? Is doing science really like a step function: all or nothing? To be fair, the editorial doesn’t say this, but that’s how I read the subtext.

Read more on the Ronin Institute blog post….

“Future of Careers in Scholarship”: November Unconference

The Ronin Institute is holding an Unconference on the 5th November on the future of careers in scholarship in which I’m participating. The Digital Biologist has more about the meeting:

If you’re interested in the future of research and scholarship, and like many in the field, you also subscribe to the consensus view that the current system is broken, you won’t want to miss the Ronin Institute’sThe Future of Careers in Scholarship”, being held in Cambridge MA on November 5th. The unconference format of the meeting, will even allow you and other attendees to shape the agenda of the meeting, so come prepared to be an active participant rather than just a spectator. The meeting will be hosted at The Democracy Center in Harvard Square and you will have the chance to meet and network with an eclectic and forward-thinking group of people from a range of fields of study.

If you are really interested in the future of research and scholarship, and would like to get involved in the movement to advance beyond our current broken system and build new models for doing research, take a look at the Ronin Institute website. The Ronin Institute is devoted to facilitating and promoting scholarly research outside the confines of traditional academic research institutions.

More from The Digital Biologist

Decoding Turnbull: what his 2015 acceptance speech really said

On the day of the 2016 Australian Federal election, let’s rewind to last year.  On September 14, 2015, Malcolm Turnbull ascended to the party Liberal Party leadership, and Australia breathed a collective sigh of relief as the brief, but strange and destructive, reign of Tony Abbott came to an abrupt end.  There was a sense, especially amongst Australian progressives, that we might see a return to a more moderate Liberal Party. And if you cursorily examine Turnbull’s acceptance speech, it sounds thoroughly sensible and moderate, touching on now-familiar bromides of “creativity” and “innovation”:

“This will be a thoroughly Liberal Government. It will be a thoroughly Liberal government committed to freedom, the individual and the market. It’ll be focused on ensuring that in the years ahead as the world becomes more and more competitive and greater opportunities arise, we are able to take advantage of that. The Australia of the future has to be a nation that is agile, that is innovative, that is creative. We can’t be defensive, we can’t future-proof ourselves. We have to recognise that the disruption that we see driven by technology, the volatility in change is our friend if we are agile and smart enough to take advantage of it. There has never been a more exciting time to be alive than today and there has never been a more exciting time to be an Australian. We will ensure that all Australians understand that their government recognises the opportunities of the future and is putting in place the policies and the plans to enable them to take advantage of it.”

Who can be against any of that?  Sounds good, right?  Being agile, creative, innovative! Yeaah! But having lived in the United States through the first dot-com boom, the Global Financial Crisis, and now the current tech-boom that creates only a relatively small number of jobs (and wealth for only a few of those in those jobs) and the rise of the predatory “sharing economy” of AirBnB and Uber, many of these phrases ring hollow to me. Phrases that use words like agility, creativity and innovation are very handy because they sound great as sound-bites, but are more often used as a fig leaf to disguise the true agenda.  Cognitive linguist George Lakoff in Don’t Think of an Elephant and Moral Politics has written extensively about how US right-wing think-tanks like the Heritage Foundation and the American Enterprise Institute have been successfully using words and metaphors to “frame” otherwise unpalatable policies for decades.  These think-tanks have, in turn, been diligently exporting these framings around the world through exchanges with Australian equivalents like the Institute for Public Affairs. Creativity and innovation used in the context of the LNP are code for a corporatist neoliberal set of policies that is focused on one thing and one thing only: enriching those already wealthy with even more wealth.

Many progressive Australians didn’t really see this true agenda clearly and wanted to believe that this would be a kinder, gentler Coalition government. I, too, shared this hope (although there were some commentators at the time who were not buying it). And, while the rhetoric on social issues like gay marriage has clearly shifted in a more moderate direction, in the areas that affect the most people: economics, benefits, job security and investments to build a better future, the Turnbull government has doubled-down on the economic rationalism. (The Labor Party under Shorten, by mostly sticking to economic rationalism-lite, has failed to offer a truly compelling alternatives).

So before today’s election I offer this handy decoded version of Turnbull’s acceptance speech to reveal what he really means:

“This will be a thoroughly NeoLiberal Government. It will be a thoroughly NeoLiberal government committed to freedom, the individual and the converting any  remaining  institutions devoted to the public good over to market-based solutions even in areas where they demonstrably do not work like healthcare, labor markets, carbon emissions regulation and financial regulation. It’ll be focused on ensuring that in the years ahead as the world becomes more and more competitive because we’ve engineered it to be so through deregulation and capital market expansions and flexible labor market policies and there is greater misery opportunities for ordinary people, we are able to the lucky and the wealthy can take advantage of that. The Australia of the future has to be a nation that is agile and jumps when transnational corporate interests want us to jump as specified in “trade” agreements like the TPP, that is innovative in creating wealth for a smaller number of people with fewer stable jobs through more complicated financial services and instruments, that is creative in moving money around but is not creative in challenging corporate interests and we will defund the those in the sciences or arts organizations that do so. We can’t be defensive, we can’t future-proof ourselves by collectively deciding where we allocate our resources democratically. We have to recognise that the disruption that we see driven by technology  neoliberal policies that deliberately transfer wealth up the hierarchy by invoking an outdated notion of  technological determinism to disguise those policies, and that the volatility in change is our friend if we are for those of us who are agile and smart enough to take advantage of it, and we will heap scorn and derision and demonize those who question these policies. There has never been a more exciting time to be alive than today if you’re in the 1% and there has never been a more exciting time to be an Australian in that 1%. We will ensure that all Australians understand that their government recognises the opportunities of the future for its wealthy friends in the corporate class and is putting in place the policies and the plans to enable them to take advantage of it, by privatizing Medicare, deregulating the public university system and introduce US-style student loans and removing people or groups in positions of authority in institutions such as the CSIRO or the ABC that question these policies.

In the Turnbull/Liberal National Party “vision” there is no sense of the common good, of building a democratic future together, of supporting and strengthening civil society, of investing in basic science (outside of narrowly defined biomedical science, funded through cuts to Medicare), or growing sustainable (i.e. non-venture-capital based) small and medium sized businesses that create long term value for Australians. Just every agile man and women for him or herself in the global marketplace.

Get jumping!!